BOLD View

BOLD View is an tool to explore DNA barcode data. This version is based on data from BOLD_Public.06-Sep-2024.

Geography

Phylogeny

Taxonomy

Starting points

• Main features
• A browseable map of barcodes.
• Find barcodes that match a sequence using vector search.
• Barcodes
• View a barcode for a stingless bee Hypotrigona from South Africa: KMPPA063-18.
• View a barcode for a gecko Tropiocolotes tripolitanus with multiple BINs REWSS381-22
• View a barcode for a Fijian bee Homalictus nadarivatu with interesting tree GBMNC45937-20
• View a barcode (ANGBF37031-19) that is part of a BIN labelled with synonyms (Apogon smithi and Jaydia smithi), see "Exploring artificial neural networks for the curation of DNA barcode reference libraries..." doi:10.22541/au.172374899.92498971/v1.
• View a barcode (GBMNC29092-20) that is part of a clade of unnamed species of "Ariophantidae" in BOLD but we have names (see doi:10.1163/18759866-BJA10013). We also have records in GBIF from this paper via Plazi, but these contain errors and do not include accession numbers.
• View a barcode (SICOD1591-19) that has a specimen code USNMENT1566178 that is missing one digit (a leading "0") from the code for the same specimen in GBIF. GBIF does not know that this specimen has been sequenced.
• View a barcode (GBCOC12389-23) for the snake genus Sinomicrurus that is identified only as "Chordata"
• View a barcode (GACS2982-19) for a spider genus based on Genbank sequence that has subsequently been described (doi:10.54102/ajt.unvpo). Note that barcode lacks coordinates but matches GBIF record 1086173127) that does.
• View a barcode (GBMOR866-13) for a cricket endemic to New Caledonia that lacks coordinates, but specimen MNHN:ENSIF 2785 matches GBIF record 583403653) that does. See also doi:10.1371/journal.pone.0048047.
• View a barcode (GBCAA23334-24) for a Chinese cricket that lacks coordinates, but GenBank record (OP799996) has isolate number with code based on lcations in supplementary material in paper (see PMC10475508).
• BINs
• View a BIN for ant-mimicing spiders in Borneo: BOLD:ACO6074.
• View a BIN which includes holotype (PNGTY1822-15): BOLD:ACA8529
• View a BIN with two taxonomic names, one for each sex BOLD:ACG2612 (see doi:10.54102/ajt.df83w)
• View a BIN (BOLD:AAD8883) with a messy taxonomy involving synonyms and non-synomyms.
• Taxonomy
• View taxonomy for Homalictus which Wikipedia says is not a genus.
• View taxonomy for Mabuya which Wikipedia says is a "wastebasket taxon".
• View taxonomy for Anaspidacea which are mostly found in Tasmania, but BOLD lacks this information.
• Record sets
• View recordset DS-2019PHY which is cited by "Microbiome and environment explain the absence of correlations between consumers and their diet in Bornean microsnails" (doi:10.1002/ecy.3237).
• View recordset DS-SATYP1 which comprises type specimens of saturniid moths.
• View recordset DS-PREYARMY containing army ant prey, the army ants themselves are in DS-NEOARMY, see "Hunting habits die hard: Conserved prey preferences in army ants across two distant neotropical rainforests" doi:10.1002/ecs2.4812.
• View recordset DS-ALLSAT containing lots of images of saturnids (no DOI).
• Specimen links
• View a barcode (CALI045-19) where BOLD has a specimen image but the museum specimen NHMUK013377209(the NHM) does not .
• Nomenclature
• Dicrotendipes sinicus had to be published twice, doi:10.1111/zsc.12331 and doi:10.5324/cjcr.v0i34.4079
• Congeria species published twice, doi:10.1186/1742-9994-10-5 and doi:10.20302/NC.2023.32.29