╳

Barcode GBGL0272-06

A barcode is a DNA sequence obtained from a sample, typically an individual organism.

Details

Data for this barcode.

Identification
Phauda bicolor
GenBank accession
AJ556909
BIN ID
BOLD:AAY2244
Catalogue number
DNATAX-02239
Datasets
DS-LEPMAY11 DS-HWARTHRO DS-MOLUSKA
Sample locality
Indonesia, ID, North Sumatra,Purba, 1 km S Seribudolok, 2o54`59``N 98o38`24``E, 1380 m, 03.02

Taxonomy

Taxonomic classification of barcode.

Sequence

DNA barcode sequence.

CGAAAATGATTATTTTCCACAAATCATAAAGATATTGGAACATTATATTTTATTTTTGGA ATTTGAACAGGAATAGTAGGAACTTCTTTAAGTCTATTAATTCGAGCAGAATTAGCTAAC CCAGGATCTTTAATTGGAAAT---GATCAAATTTATAATACAATTGTTACAGCTCATGCT TTTATTATAATTTTTTTTATGGTTATACCAATTATAATTGGAGGATTTGGAAATTGATTA GTACCTTTAATATTGGGAGCCCCTGATATAGCATTCCCACGAATAAATAATATAAGATTT TGACTTCTTCCCCCCTCATTTATACTTTTAATCTCAAGAAGAATTGTTGAAAATGGAGCA GGAACAGGATGAACAGTTTACCCCCCACTTTCATCAAATATTGCCCATAGAGGAAGATCA GTTGATTTAGCAATTTTTTCCTTACACTTAGCAGGAATCTCTTCAATTTTAGGAGCTATT AATTTTATTACCACAATTATTAATATACGACCTAATAATATAATATTTGATCAAATACCA TTATTTATTTGAGCTGTAGGAATTACAGCTTTACTTTTACTTTTATCATTACCAGTATTA GCTGGGGCTATTACTATACTACTTACAGATCGAAATTTAAATACTTCATTTTTTGATCCT GCAGGGGGTGGTGATCCAATTTTATATCAACATTTATTTTGATTTTTTGGTCATCCTGAA GTTTATATTCTAATTCTCCCAGGATTTGGAATAATCTCACACATTATTTCCCAAGAAAGA GGTAAAAAAGAAACTTTTGGATGCTTAGGAATAATTTATGCTATAATAGCAATTGGTTTA TTAGGGTTTGTAGTTTGAGCTCACCATATATTTACAGTAGGAATAGATATTGATACTCGA G----------------------------------------------------------- ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------ ------------------------------------------------------------

Related barcodes

Neighbour-joining tree of sequences most similar to this barcode based on shared k-mers. Position of barcode is highlighted.

BIN map

Map of barcodes in the related set, grouped by BIN. Each BIN is enclosed by its convex hull.

t-SNE plot

t-distributed stochastic neighbor embedding (t-SNE) plot for k-mer vectors for barcodes.