Barcode GMESB559-14
A barcode is a DNA sequence obtained from a sample, typically an individual organism.
Details
Data for this barcode.
- Identification
- Platygastridae
- BIN ID
- BOLD:ACP0173
- Catalogue number
- BIOUG14516-A03
- Datasets
- DS-MAEGY DS-MAREG DS-MAEGY2 DS-19GMPEG1 DS-20GMP27
- Voucher type
- Vouchered:Registered Collection
- Sample locality
- Egypt, EG, Alexandria, Smouha, Antoniades Gardens
- Geographical coordinates
- {"31.204","29.9496"}
Taxonomy
Taxonomic classification of barcode.
Sequence
DNA barcode sequence.
-ACCTTATATTTCTTATTTGGAATATGATCTGGTTGTATGGGAACAAGAATA---AGTAT
AATTATTCGAATAGAATTAAGTGGCCCCAATAAATTAATTGAAAAT---GACCAAATTTA
TAATACTATAATTACAGCCCATGCCTTAGTTATAATCTTTTTTATAGTAATACCAATTAT
ATTAGGAGGATTTGGAAATTGATTAATTCCTTTAATAATAACA---TCCCCTGATATATC
ATTTCCTCGTTTAAATAACATAAGATTTTGATTATTACCCCCATCAATAACATTATTAAT
TTATAGAAGAATATCTGGAAATGGGACAGGAACAGGTTGAACTATTTACCCTCCATTATC
A---------TTAATAAATAATATTTCTATTGATTATAGA---ATTTTCTCATTACATCT
TGCAGGAATTTCTTCAATTTTAGGTTCAATTAACTTCATTTGTACAATTTTAAATATACA
TCCAATAAAAATAAAAATTGAATTAAATACTTTATTTTCTTGATCAATCTTTATTACAAC
AATTTTACTTTTACTATCTCTACCAGTACTAGCGGGAGCAATTACCATATTATTAAGTGA
TCGA---------------------------------------------
Map
Where barcode was sampled.
Related barcodes
Neighbour-joining tree of sequences most similar to this barcode based on shared k-mers. Position of barcode is highlighted.
BIN map
Map of barcodes in the related set, grouped by BIN. Each BIN is enclosed by its convex hull.
t-SNE plot
t-distributed stochastic neighbor embedding (t-SNE) plot for k-mer vectors for barcodes.